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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagctttttgctagtttctatggaaatcacataataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG

Basic information

species Glycine max
transcript GLYMA07G02280.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os04g23180.1 (Oryza sativa), 3'ss of exon 9
gtacaagctttttgctagtttctatggaaatcacataataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG
||  ||  || | | ||   |   |  | ||| || | |   | ||| |  ||  |  ||| |        ||   |  |  ||||||||||| | || ||||||||||||||||| || ||||| || |||||||| ||||| || || ||||| |
gtgaaaatttgtggatatccttattccatatcgcacactggatctat-gttatggagctgatttt-----cttgcatcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCTTTAGATTCAAAGCTGAAATTG

upper sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G065839_T01 (Zea mays), 3'ss of exon 9
gtacaagctttttgctagtttctatggaaatcacataataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG
     ||||||    |  |   | ||||| |  | ||  | || | ||   |   |  | | |  ||||  || |    |  ||||||||||| | || ||||||||||||||||| || |||||||| || || || ||||| ||||| ||||| |
--gtgagctttgacattataattttggaact-gcttagaagctcttttatga---aactaatt--ggtatcttct----tgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGGCCAGGTTTTTTTAGATTCAAGGCTGAAATTG

upper sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G032293_T02 (Zea mays), 3'ss of exon 1
gtacaagctttttgctagtttctatggaaatcacataataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG
    |||||||    |  |   |  |||| |  | ||  |  |||       || ||    ||||    || ||  |||   |||| |||||| | || |||||||||||||| || || |||||||| ||||| || ||||| ||||| ||||| |
--gtaagctttggcattataatttcggaact-gcttagaagtttt-------tttatgaagctaattatatcttcttgc---agGTCGTAGATGCTCTTTATGATTGCAAAAGCGAGGTGATTGGGCCAGGATTTTTTAGATTCAAGGCTGAAATTG

upper sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G032293_T01 (Zea mays), 3'ss of exon 2
gtacaagctttttgctagtttctatggaaatcacataataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG---------------------------
    |||||||    |  |   |  |||| |  | ||  |  |||       || ||    ||||    || ||  |||   |||| |||||| | || |||||||||||||| || || |||||||| ||||| || ||||| ||||| ||||| |                           
--gtaagctttggcattataatttcggaact-gcttagaagtttt-------tttatgaagctaattatatcttcttgc---agGTCGTAGATGCTCTTTATGATTGCAAAAGCGAGGTGATTGGGCCAGGATTTTTTAGATTCAAGGCTGAAATTGGTAGTCTTTATATTCTGGCATTTCACC

upper sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 8
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacaagctttttgctagtttctatggaaatcacata-ataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG
||||||  | ||       |  | | |||||| |||| || ||     |     |    | |  |    |  || |||  | ||||||||||||||  | ||||| |||||||||||||| ||||| ||||||| |||||||||||| || |||||||
gtacaaattcttcttatcataatttagaaatctcatatatgacgcatgtagaggtgggctcagaatcaaatattgtgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAG

upper sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 9
-----------------gtacaagctttttgctagtttctatggaaatcacataataactttattgccattcatttgactaaggtaatttttgtgcttt--agGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG
                 | | ||   | |  | | |  |||  |  || ||||| |      | |   |    |  ||||    | |||| | |  |||  |||| || ||| | || |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||
gtattgttttctacactgaataactctatcccaattagctactgttat-acatatttgtcccagtttgacgggtacgactctatttatttattttttttgtagGTAGTTGATGCTCTATATGATTGTAAAAGTGAGGTGATTGGACCTGGGTTCTTTAGGTTTAAGGCAGAAATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcacataataactttattgccattcatttgactaaggtaatttttgtgctttagGTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAG
                                         tttttgt  CT-rich tract
     ataataactttatt  TA-rich tract