1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcatttatgatatttcattcattaatcttcttttgatataaaaaaggattaattatttaattaccatctaatcatttatttgtaataattaattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTCCTGTGTCATGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACT
species | Glycine max |
transcript | GLYMA07G02120.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG GACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTEST: gi|58025145|gb|CX711886.1|CX711886
genomic: CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGgtattctttc ... aattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
EST: TGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG GACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTEST: gi|213608378|gb|DB974950.1|DB974950
genomic: TGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGgtattctttc ... aattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
EST: GTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG GACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTEST: gi|207819971|gb|GD793349.1|GD793349
genomic: GTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGgtattctttc ... aattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
EST: ACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG GACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTEST: gi|209722358|gb|BW665844.1|BW665844
genomic: ACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGgtattctttc ... aattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
EST: CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG GACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTEST: gi|13312684|gb|BG406335.1|BG406335
genomic: CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGgtattctttc ... aattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
EST: CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAG GACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
genomic: CTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGgtattctttc ... aattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTT
ggattaattatttaattaccatctaatcatttatttgtaataattaattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTCCTGTGTCATGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACT
aattaat putative branch site (score: 3)
aattatttaattacca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttatgatatttcattcattaatcttcttttgatataaaaaaggattaattatttaattaccatctaatcatttatttgtaataattaattaatcagGACGCAAAAGATAAGCCAAGGGACTTGAAGAGTAGAGGGCTGTGCTTGGTTCCTGTGTCATGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT