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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttacttctctcctgtttctgcagtattttagttagaatctttatttgtgtgaaattaaactagcatttctttcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA

Basic information

species Glycine max
transcript GLYMA07G01720.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193629202|gb|FK578150.1|FK578150
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|14126467|gb|BG790905.1|BG790905
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|207771211|gb|GD742462.1|GD742462
EST:     TGTTGATATAGCAGCC-AAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|193466023|gb|FK429764.1|FK429764
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCCGGACAAG                         TTACACAGGTACAGCTTGACCGAGACCAAAAAATCCACAAAGTCTGCAGTT
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAG-CCAAAAAATCCACAAAGTCTGCAGTT
EST: gi|193626188|gb|FK573031.1|FK573031
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCA
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCA
EST: gi|192307375|gb|FK001963.1|FK001963
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|21257242|gb|BQ454130.1|BQ454130
EST:     ATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: ATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|208072768|gb|GD872369.1|GD872369
EST:     CCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: CCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|192307855|gb|FG999334.1|FG999334
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
EST: gi|208148512|gb|GD946348.1|GD946348
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCC
EST: gi|193640001|gb|FK590146.1|FK590146
EST:     TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG                         TTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC
genomic: TGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGgttttacttc ... tcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagttagaatctttatttgtgtgaaattaaactagcatttctttcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA
                                     catttctttc  CT-rich tract
     ttagaatctttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttacttctctcctgtttctgcagtattttagttagaatctttatttgtgtgaaattaaactagcatttctttcgatgacagTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG