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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaccgtttggaaacttagtctccttttctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTGCCAATAATTTACCATGATAGCCAACTAGTTTTGTATGGAGTAGAGAGAA

Basic information

species Glycine max
transcript GLYMA07G01660.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31456874|gb|CD398902.1|CD398902
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|31312066|gb|CD397269.1|CD397269
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGACCAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTGCCAATAATTTACCATGATAGCCAACTAGTTTTGTATGGAGTAGAGAGAA
                             tactaaa  putative branch site (score: 1)
                                     tgtctttctttgct  CT-rich tract
     ttttttctt  TA-rich tract