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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacactacatcttattaattaaatatattggtgaatggtgactggctactaagtgtgtattgtgcaaagatatatcaattttttctctaactttcttcggcatatatacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG

Basic information

species Glycine max
transcript GLYMA07G01660.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01660.5 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 3'ss of exon 9
gtaacactacatcttattaattaaatatattggtgaatggtgactggctactaagtgtgtattgtgcaaagatatatcaattttttctctaactttcttcggcatatatacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG
                 |||   |  | |||| | |       |  ||  || | ||| ||| ||   || || ||   |   |   |     |||||||            ||||||||||| ||||| |||||||||||||| |   | || |||||||| | ||| || || |||||  | || ||||| ||||||
----------------gtaagccaccagattgatcac------cctgcatcttaatgtatatagtatgaaaatgtactgaacatgaat--ggttttcttc------------tgcagCAAATACGACCTGTACAGCAAGAGCAATGAGAGGATAGACGTTGAGAAGGTGAAGCCCTACTACATGTCACTCATCGAAAAG

upper sequence: GLYMA07G01660.5 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 3'ss of exon 9
gtaacactacatcttattaattaaatatattggtgaatggtgactggctactaagtgtgtattgtgcaaagatatatcaattttttctctaactttcttcggcatatatacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG
                | |  | |  || ||  |   |      | | | |||| | |   |||   ||  |  | | |  ||| | |   | |  ||||      ||||  ||||||||||||||||||||||||||||||||||| ||||| || ||||| | |||||| || |||||||| |||||||||||||||
---------------gtaagattaccatttttttcttttactttttggtcctaactatactttgcctaataaattctaatgtttattttccaatgccttc-----ctatatatgcagCAAATATGACCTTTACAGCAAGAGCAAAGTCCGAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG

upper sequence: GLYMA07G01660.5 (Glycine max), 3'ss of exon 7
lower sequence: EFJ20873 (Selaginella moellendorffii), 3'ss of exon 8
gtaa-cactacatcttattaattaaatatattggtgaatggtgactggctactaagtgtgtattgtgcaaagatatatcaattttttctctaactttcttcggcatatatacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG
|||| ||          |||  |   || |  |  || |   |  |  ||| |   ||  ||  |    ||| |     || | |      || |  ||      |       |||||||| ||||||||||||||||||||||||||  || | || || |||   |  |||||||| || ||||| |||||||| |||
gtaagcaaagagagagcttagattgctagaccga-gagtaa-gcttttctagtctctggttagcggcttaagctgcgaaaactctactgacaaatccctgttctgt---cgtttgcagCAAGTATGACCTTTACAGCAAGAGCAAAGTCAGAGTCGATGTGGAAGCCGCAAAACCATATTACCTCTCACTCATTGACAAG

upper sequence: GLYMA07G01660.5 (Glycine max), 3'ss of exon 7
lower sequence: EFJ32371 (Selaginella moellendorffii), 3'ss of exon 8
gtaacactacatcttattaattaaatatattggtgaatggtgactggctactaagtgtgtattgtgcaaagatatatcaattttttctctaactttcttcggcatatatacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG
                     |||  | |  |    |   |   | |||| |   ||  ||  |    ||| |     ||   |      || |  ||      |       |||||||| ||||||||||||||||||||||||||  || | || || |||   |  |||||||| || ||||| |||||||| |||
--------------------gtaagcaaa--gagagagcttagattgctagtctctggttagcggcttaagctgcgaaaaccctactgacaaatccctgttctgt---cgtttgcagCAAGTATGACCTTTACAGCAAGAGCAAAGTCAGAGTCGATGTGGAAGCCGCAAAACCATATTACCTCTCACTCATTGACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15661860|gb|BI699231.1|BI699231
EST:     TTGCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAA                         CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
genomic: CTGCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAAgtaacactac ... atacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
EST: gi|9984916|gb|BE659024.1|BE659024
EST:     GCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAA                         CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
genomic: GCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAAgtaacactac ... atacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
EST: gi|31457327|gb|CD399355.1|CD399355
EST:     CTGCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAA                         CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
genomic: CTGCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAAgtaacactac ... atacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
EST: gi|192295840|gb|FG992636.1|FG992636
EST:     CTGCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAA                         CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
genomic: CTGCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAAgtaacactac ... atacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
EST: gi|6964484|gb|AW433177.1|AW433177
EST:     GCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAA                         CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT
genomic: GCTGAACGATGAGGATGTTGAGAATCTGAAATGGCTCCACATTTTCAAgtaacactac ... atacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcaaagatatatcaattttttctctaactttcttcggcatatatacctgcagCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG
                        ctctaac  putative branch site (score: 2)
     aaagatatatcaattt  TA-rich tract