1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tacaacatgtttctattatactcactagtttgttaagtttgttgcacacttttggcttctaaatttctcctttgtccttgtatatcaatcaatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATTGATGAAGGAAGGTACAGACAAACCAACTTGATTGACGAG
species | Glycine max |
transcript | GLYMA07G01260.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|9203635|gb|BE329859.1|BE329859
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGgtttagttaa ... aatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|209720553|gb|BW675025.1|BW675025
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGgtttagttaa ... aatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|193543241|gb|FK503708.1|FK503708
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGgtttagttaa ... aatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: CGTGGTGCACCTCCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCAT
genomic: CGTGGTGCACCTCCTCCACCTTCAGgtttagttaa ... aatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCAT
acacttttggcttctaaatttctcctttgtccttgtatatcaatcaatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATTGATGAAGGAAGGTACAGACAAACCAACTTGATTGACGAG
ttctaaa putative branch site (score: 2)
ttctaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaacatgtttctattatactcactagtttgttaagtttgttgcacacttttggcttctaaatttctcctttgtccttgtatatcaatcaatcaattagGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATTGATGAAGGAAGGTACAGACAAACCAACTTGATTGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -catgttt
- - - - - - - - - - - - - - - - - - - - - tgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - tggcttc