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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggttaatcttcatttgtgatattttaattttgcttttctatgctctctggtttggccaaccattcattgttccaattgctgtaatttttaaattgaattactttgtagTCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT

Basic information

species Glycine max
transcript GLYMA07G00350.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 3'ss of exon 9
gtaatggttaatcttcatttgtgatattttaattttgcttttctatgctctctggtttggccaaccattcattgttccaa--ttgctgtaatttttaaattgaattactttgtagTCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT
             |   || ||| | | ||  | || |||||||    |           | ||   ||  || |   ||  ||| | ||||  ||    ||  |   |||  |||||||||||||| | || |||||||| ||||||||||| |||||| |||||||||| |||||||| ||| | || || ||||| || ||    ||||| |
----------ggttatgttggtgttgtcttgttcttccttttctgcagt-----aaacatcaaattcttttttctctgaagtttgttataataattggcctgtgtacattttcagTCTACCCGGTGGCTCCTGTACACTGAACAAGCACCTTCTGCATGGCTCAATTTTGCCTTGTGTGGCTTGGTGGGCATCATCACAGCATATGCTTTTGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193413398|gb|FK376051.1|FK376051
EST:     AGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTG                         TCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
genomic: AGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatggtta ... tactttgtagTCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
EST: gi|18692782|gb|BM521630.1|BM521630
EST:     AGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTG                         TCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
genomic: AGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatggtta ... tactttgtagTCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
EST: gi|193621127|gb|FK570419.1|FK570419
EST:     AGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTG                         TCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
genomic: AGAAAGGATATTCTTTTACAATAGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatggtta ... tactttgtagTCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccaaccattcattgttccaattgctgtaatttttaaattgaattactttgtagTCTACCCGGTGGTTACTCTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT
                                            ttacttt  CT-rich tract
                          tgtaatttttaaattg  TA-rich tract