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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgggaaagttgattttatccatccgattgtaatcaaatcattaatcatgaatacttttgattcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC

Basic information

species Glycine max
transcript GLYMA07G00230.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 3'ss of exon 9
gtgatgggaaagttgattt-tatccatccgattgtaatcaaatcatt--aatcatgaat-acttttgattcccttagctttc---tattc--cagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
    |  |||| | |     ||| | | | |  | |  | |||||||  || ||| ||| |    |||  |  ||   | ||   | ||   ||||  ||  | ||||| || |  ||||||||||| ||||| ||||||||||| ||||||||||||||||||||  | |||||    |  || || ||||| |
---gtaagaaattagtccagtattctttcaaaagaacaccaatcatttcaagcataaatcatacgtgaaactgttttttatcaaatgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------gtgatgggaaagttgattttatccatccgattgtaatcaaatca-ttaatcatgaatacttttgattccctt--agctttcta------ttccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                                     ||  |  |||| |   |||     ||   | | | || |||| | | ||  |   | | |  | |||| |||  |  |||| |      || ||||   || | || ||||| |  ||||||||||||||||| ||| |||||||||||||||| ||||||| |||  | |||||  |||| || || || || |
gtgagaaagtggtctgatcatttgaaatatgtgatcgcctcttgatgttagtagttctaagaaattc--tttccgtaatgaaagttttattaaataaatcaagaaaataaaatcctaattctctttaacatttccaaatattttgcagGCTATTCTTTTATTTCAGAAAATAGAAGGTGTGGAAGTATGCTTATTTGGCATGTATGTCCAAGAATATGGTGCAGAATGCAAATTCCCAAACCAACGTC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G470556_T01 (Zea mays), 3'ss of exon 8
gtgatgggaaagttgattttatccatccga--ttgtaatcaaatcattaatcatgaatacttttgattcccttagctttctattc-----cagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
     |  | | || ||| |   |||  ||      ||||  |     | |||  |||   |   |  |  ||   | |  | |      ||||  ||| | ||||| || || ||||||||||||||||| || |||||||||||||||||||||||||||||  | |||||    |  || || |||||||
-----gtaagaattcattcttgtcatttgaagcatgaatcgtagttacactcactaatttctgcaacactattttttatgaaatgttggacagGCTGTTCTCTTGTTCCAGAGAATAGAAGGTGTGGAAGTATGTCTATTTGGCATGTATGTTCAAGAATTTGGTGCAGAATGCTCTTCCCCGAACCAGCGCC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G139977_T02 (Zea mays), 3'ss of exon 2
gtgatgggaaagttgattttatccatccgat---tgtaatcaaatcattaatcatgaatact---tttgattcccttagctttc-----tatt--ccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
     |  | | || ||| |   |||  ||    || | |  | |||  | |||    ||||   ||      || ||  |||      | ||   ||||  ||| | ||||| || |  ||||||||||||||||| || |||||||| ||||||||||||||||||||  |||||||    || || || ||||| |
-----gtaagaattcattcttgtcatttgaagcatgaattgtagtcacaactcacacgtactaatttctgcaaccgtatatttatgaaatgttggacagGCTGTTCTCTTGTTCCAGAAAATAGAAGGTGTGGAAGTATGTCTATTTGGAATGTATGTTCAAGAATTTGGTGCTGAATGCTCTTTCCCGAACCAGCGTC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 9
-------------gtgatgggaaagttgattttatccatccgattgtaatcaaatcattaat--------catgaatacttttga--------ttcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
              || | ||    |   | || ||| ||   ||||  || ||| || |          |||||   || ||||        |||| |   | || | || ||||   || |||||||||| | ||| |||||||| ||||| ||| |||||||||||||||| || ||||||||| | || | |   | ||| ||||||||||
gtacagattgtgtatgcttggttcttatttcttttccttctttttgttttctaattatgaccttctgctacatgatgcctgttgactatcaacttccatactcattttttttcagGCCATTCTGTTGTTTCAGAAGATTGAAGGTGTTGAAGTATGCTTATTTGGCATGTATGTCCAGGAATTTGGAACAGATTCTGCGTCTCCCAATCAGCGCC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 3'ss of exon 10
----------------------gtgatgggaaagttgattttatccatccg--attgtaatcaaatcattaat---catgaatacttttgattcccttagctttctatt---ccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                      ||  |       || | |  ||  || ||  ||| |  |  | |   |      ||   || ||| | | |||| |  | || ||||   |||||||||| |||||||||||| ||| ||||| || ||||| ||| ||||||| ||||| || |||||||| || ||||||||   |||||| ||||| ||||
gtaagaatgatcaaggcgtattgttgttactgtatttactgcatatatgcgttatttttctggagttcctctcgtacaattatccttctcactcccatgccattttatttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGATGTACGTCCAAGAATTCGGTTCTGAATGCGCATTTCCCAATCAACGCC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
-------------------gtgatgggaaagttgattttatccatccgattgtaatc-----aaatcattaatcatg--aatacttttgattcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                      ||       ||   || ||     |  ||   ||       | || |   |  |   ||||   ||  | | |     ||| | |  ||||| ||| || |||| || | |||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| ||||||  |  ||| ||||| ||||
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 8
---------gtgatgggaaagttgat-tttatccatccgattgtaatcaaatcattaatcatgaatacttttgattcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
          ||      |||||||| ||| | |||    |||  |  ||  | | ||| |||||  ||   ||||  |||   ||||  ||||||||| ||||||||||||| | ||| ||||| || ||||| ||| ||||||| ||||||||||||||||||||||| ||||||| ||| || ||||| || |
gtatgcaggatgtatattaagttgatgttttttcatatagttg--acaaagacttaaattatgaa--ctgaagattgtctt---tttcgtttccagGTAATTTTGTTGTTTCAGAAGATTGAAGGAGTAGAAGTATGCTTATTTGGGATGTATGTTCAAGAATTTGGATCAGAATGTCTATTCCCAAATCAACGTC

upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S193_70V6.1 (Physcomitrella patens), 3'ss of exon 10
-------------------------------------------------------------gtgatgggaaagttgat--tttatccatccgattgtaatcaaatcattaatcatgaatacttttgattcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                                              || |    | |||  |  ||| |   | | ||  ||||  || | | | | ||    |||| |        ||  ||| |  | ||||| || ||| ||||||||| ||| |||||||| |||||||| || || ||||||||||| ||||| |||||    |||||     |||| ||||||||  
gtatattttgcttgtggtttagtgtggccaacaaagtttccaagcttgtctttcaaaactcatgttcacgatgtttttgctttgtggtttcaatgttaatataagcgt-atttatagggacttgt----ttgctatttttgttattcagGTGGTATTGCTGTTTCAAAAGATCGAAGGTGTAGAAGTTTGTCTCTTCGGCATGTATGTCCAAGAGTTTGGGATGGAATGCTCTCTTCCAAATCAGCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaatcaaatcattaatcatgaatacttttgattcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                 ttcccttagctttct  CT-rich tract
       aaatcattaatcat  TA-rich tract