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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 9
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 3'ss of exon 9
---------------------gttt-gttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgct---tacacagctgatta--tggcatcatat-taacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
                     |||| ||  |||||    || ||   |  |||    | | | |  | | ||    ||| ||   |   | ||   | ||   | |   |   ||||  |    || | | |||||||||| || |||||||||||||| || ||||| |||||| | || ||||| ||||||||||| ||
gtttgttcttttccagtttgtgtttagtgtttgttcacctgtaaagacg-gatataaagtatgac-acacgccagaaaacacgtaactgtatttatttctctatgccaggtaaattaatttctgtcgtgtctaacagGTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCAT

upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------------gtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagc-tgattatggcatcatattaa-cagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
                                                              |     |||  | | | | ||| |  |  || || |||        || |       |  | | ||    ||  | |  |   || || |    |  |   || ||||||| ||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||| ||
gtgagttccgttaatcatttatccatcttctatctcatattttaccaagttaaagcaaaaaaggaaaagttcttattatactgc-tacttttcccttttacgtctcaaattttgttcgccattaagttcaattgtcttctgaatgtggtttttatgttgtgcaaaacagGTATCTTAATTGAGAATATGAGGCGTGAAGGATTTGAGCTCTCCGTCTCACCACCTAAAGTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238336|gb|BE807152.1|BE807152
EST:     AGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGG                         GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTC
genomic: AGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttctt ... atattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
                                          atcatattaa  TA-rich tract