Sequence
atgc intronic sequence ATGC exonic sequencegtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
Basic information
species | Glycine max |
transcript | GLYMA06G43820.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 9
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 3'ss of exon 9
---------------------gttt-gttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgct---tacacagctgatta--tggcatcatat-taacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
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gtttgttcttttccagtttgtgtttagtgtttgttcacctgtaaagacg-gatataaagtatgac-acacgccagaaaacacgtaactgtatttatttctctatgccaggtaaattaatttctgtcgtgtctaacagGTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCAT
upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------------gtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagc-tgattatggcatcatattaa-cagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
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gtgagttccgttaatcatttatccatcttctatctcatattttaccaagttaaagcaaaaaaggaaaagttcttattatactgc-tacttttcccttttacgtctcaaattttgttcgccattaagttcaattgtcttctgaatgtggtttttatgttgtgcaaaacagGTATCTTAATTGAGAATATGAGGCGTGAAGGATTTGAGCTCTCCGTCTCACCACCTAAAGTCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10238336|gb|BE807152.1|BE807152EST: AGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGG GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTC
genomic: AGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttctt ... atattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT
atcatattaa TA-rich tract