1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttattttctggcttagtcctagcaaaaagtggaagagaaaatgacttaatatttttcatagtacattaatgaccaactttgtttcttcttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGACTTCGCGATTCATACATCACAACCCTCAATGTCCTGCAAGCCT
species | Glycine max |
transcript | GLYMA06G43050.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTTCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193483644|gb|FK451543.1|FK451543
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: TGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193727684|gb|FK663726.1|FK663726
genomic: TGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208284318|gb|GE085020.1|GE085020
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTAAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208223788|gb|GE023941.1|GE023941
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208263527|gb|GE061127.1|GE061127
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193588509|gb|FK538773.1|FK538773
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: CGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193484882|gb|FK452106.1|FK452106
genomic: CGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: TTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193685402|gb|FK626618.1|FK626618
genomic: TTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTCGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208177714|gb|GD974853.1|GD974853
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193348362|gb|FK309570.1|FK309570
genomic: GCGATTAAGG-TCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACAC-AAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193348078|gb|FK311834.1|FK311834
genomic: GAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193598033|gb|FK552855.1|FK552855
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207826614|gb|GD798255.1|GD798255
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207777862|gb|GD749265.1|GD749265
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208088521|gb|GD887295.1|GD887295
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: CGGGCGATTAAGGTCTATTGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|298180680|gb|HO022119.1|HO022119
genomic: CGAGCGATTAAGGTCTA-TGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193388611|gb|FK357500.1|FK357500
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|16279910|gb|BI943680.1|BI943680
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208217040|gb|GE013840.1|GE013840
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GGGCGATTAAGGTCTTATGTTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208312652|gb|GE112114.1|GE112114
genomic: GAGCGATTAAGGTC-TATG-TTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|16343769|gb|BI969364.1|BI969364
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193402068|gb|FK368855.1|FK368855
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|17020614|gb|BM091648.1|BM091648
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208176597|gb|GD975654.1|GD975654
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: CGGGCGATTAAGGTCTATTGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193342214|gb|FK308490.1|FK308490
genomic: CGAGCGATTAAGGTCTA-TGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208162725|gb|GD960545.1|GD960545
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|10255935|gb|BE823701.1|BE823701
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GTTTGAAGAAACCAAGAGCNNTNNCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207752892|gb|GD722238.1|GD722238
genomic: GTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACGAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193595426|gb|FK552233.1|FK552233
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193451943|gb|FK419427.1|FK419427
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208200225|gb|GD996070.1|GD996070
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: AAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207752921|gb|GD722253.1|GD722253
genomic: AAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193511657|gb|FK470886.1|FK470886
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|193483980|gb|FK449387.1|FK449387
genomic: GCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207698074|gb|GD679123.1|GD679123
genomic: GTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTCTATGTTTGAAGAAACCTAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|208146089|gb|GD944806.1|GD944806
genomic: GCGATTAAGGTCTATGTTTGAAGAAACC-AAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGGGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207848837|gb|GD818868.1|GD818868
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGATTAAGGTTCTATGTTTGAAGAAACCAAGAGCC-TCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|18721128|gb|BM523317.1|BM523317
genomic: GCGATTAAGG-TCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|207777718|gb|GD749681.1|GD749681
genomic: GCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: CGATTAAGGTCTATGTTTGAAGAAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|7147098|gb|AW509020.1|AW509020
genomic: CGATTAAGGTCTATGTTTGAAG-AAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: TTTGAAGAAACCAAGAGCCTTCTCCTCCAG GTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
genomic: TTTGAAGAAACCAAGAGCCTTCTCCTCCAGgtattcaatt ... ttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGA
acttaatatttttcatagtacattaatgaccaactttgtttcttcttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGACTTCGCGATTCATACATCACAACCCTCAATGTCCTGCAAGCCT
cattaat putative branch site (score: 3)
ctttgtttcttcttgt putative PPT
atatttttcatagtac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttattttctggcttagtcctagcaaaaagtggaagagaaaatgacttaatatttttcatagtacattaatgaccaactttgtttcttcttgtttgtagGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGACTTCGCGATTCATACATCACAACCCTCAATGTCCTGCAAGCCT
- - - -ttctggc
- - - - - - - - - -cctagca
- - - - - - - - - - - - - - - - - aagagaaa