1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattatttctcagtctccagaaatttttacatatgttgatttttttgcatttaccattgatgagggttattttctggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTG
species | Glycine max |
transcript | GLYMA06G21900.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAAEST: gi|6455229|gb|AW185912.1|AW185912
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAAEST: gi|58024376|gb|CX711117.1|CX711117
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCTGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTATTCCTTCCCACCTGCTAAAEST: gi|254345262|gb|GR855812.1|GR855812
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAAEST: gi|58021318|gb|CX708059.1|CX708059
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAAEST: gi|151412765|gb|EV282577.1|EV282577
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCC-ACCTGCTAAAEST: gi|58014328|gb|CX701070.1|CX701070
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAAEST: gi|192325644|gb|FK019500.1|FK019500
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAAEST: gi|192323525|gb|FK017106.1|FK017106
genomic: ATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGgtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAA
EST: TTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAAG TCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAA
genomic: TTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAA-Ggtattatttc ... ggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAA
atatgttgatttttttgcatttaccattgatgagggttattttctggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTG
cattgat putative branch site (score: 4)
ttttctg putative PPT
atttttttgcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatttctcagtctccagaaatttttacatatgttgatttttttgcatttaccattgatgagggttattttctggaattttagTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG