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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatactctctttctgtgtctgttgttaactactacattgaacattcattaatcaaaattacaatagtcaacaagagtatgttaacattttcaatttctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193323245|gb|FK292505.1|FK292505
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|207811436|gb|GD783483.1|GD783483
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|254338644|gb|GR849955.1|GR849955
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|15662847|gb|BI700218.1|BI700218
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|208271111|gb|GE066619.1|GE066619
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|193518779|gb|FK472752.1|FK472752
EST:     GCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: GCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|208188811|gb|GD981829.1|GD981829
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
EST: gi|23062967|gb|BU578537.1|BU578537
EST:     TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATG                         CGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC
genomic: TACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGgtgatactct ... tctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaaaattacaatagtcaacaagagtatgttaacattttcaatttctttaacagCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG
                            tgttaac  putative branch site (score: 2)
                                    ttttcaatttcttt  CT-rich tract
                              ttaacattttcaattt  TA-rich tract