1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tccctaatatttatgtatttgtacatgcacaacacaggcatttattagtactatatggtaaatttgttccttacaccggtcatgcactggtcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACT
species | Glycine max |
transcript | GLYMA06G16740.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG AGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAEST: gi|120530160|gb|EH258294.1|EH258294
genomic: CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGgtaaggctac ... tcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA
EST: CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG AGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA
genomic: CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGgtaaggctac ... tcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA
tagtactatatggtaaatttgttccttacaccggtcatgcactggtcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACT
tccttac putative branch site (score: 2)
tcttttgt putative PPT
tatatggtaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccctaatatttatgtatttgtacatgcacaacacaggcatttattagtactatatggtaaatttgttccttacaccggtcatgcactggtcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - -catgcac
- - - - - - - - - - - - - - - - -acaggca