1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatgtcttcactgcagttattttgccttttcatttcttgatacaacctttaaattggatttgattaataaatacttaaaatgattgtgttgataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGGAAGGCTACACCAACTATCAACAGCACATGCTTTGGATGCATAAGTAGT
species | Glycine max |
transcript | GLYMA06G15510.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|208129610|gb|GD931920.1|GD931920
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|209727966|gb|BW666686.1|BW666686
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|193433453|gb|FK403973.1|FK403973
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|151397657|gb|EV267530.1|EV267530
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGEST: gi|10848315|gb|BF070826.1|BF070826
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGNACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|193307030|gb|FK270156.1|FK270156
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|20497897|gb|BQ272827.1|BQ272827
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAEST: gi|151401872|gb|EV271685.1|EV271685
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACA
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|13481857|gb|BG511200.1|BG511200
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|16342798|gb|BI968393.1|BI968393
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|208045904|gb|GD845142.1|GD845142
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|151402745|gb|EV272558.1|EV272558
genomic: TTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|208036312|gb|GD834787.1|GD834787
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: CATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGEST: gi|193638465|gb|FK586777.1|FK586777
genomic: CATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
EST: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACA TTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
genomic: TCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACAgtgagagact ... gataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGG
cctttaaattggatttgattaataaatacttaaaatgattgtgttgataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGGAAGGCTACACCAACTATCAACAGCACATGCTTTGGATGCATAAGTAGT
aaattggatttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtcttcactgcagttattttgccttttcatttcttgatacaacctttaaattggatttgattaataaatacttaaaatgattgtgttgataatgcagTTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGGAAGGCTACACCAACTATCAACAGCACATGCTTTGGATGCATAAGTAGT
- - - - cactgca
- - - - - - - - - -ttttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg