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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacatctcttggatgctgtctatggggctcacgttttgttttggaccaattttttttttcatgatctaaatatttttttccttactacagGGTGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAG

Basic information

species Glycine max
transcript GLYMA06G15350.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207824834|gb|GD794670.1|GD794670
EST:     CTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAG                         GGTGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCT
genomic: CTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGgtatgacatc ... cttactacagGGTGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCT
EST: gi|207745127|gb|GD714445.1|GD714445
EST:     CTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAG                         GGCGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCT
genomic: CTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGgtatgacatc ... cttactacagGGTGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCT
EST: gi|193674411|gb|FK619925.1|FK619925
EST:     CTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAG                         GGTGTACCAATGGAGTCCCATCCATCCAAG
genomic: CTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGgtatgacatc ... cttactacagGGTGTACCAATGGAGTCCCATCCATCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttggaccaattttttttttcatgatctaaatatttttttccttactacagGGTGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAG
                                           tccttac  putative branch site (score: 2)
                                   tatttttttccttact  CT-rich tract
            aattttttttttcatg  TA-rich tract