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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgccactaccagtataacttttatattatacaatgactatcattgtttcaaaatatgctaacttttttcttatactttttaacagGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAG

Basic information

species Glycine max
transcript GLYMA06G14150.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14150.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv16s0098g00900.t01 (Vitis vinifera), 3'ss of exon 7
----gtttgccactaccagta--taac---ttttatattatacaatgactatcattgtttcaaaatatgctaactttt----ttcttatactttttaacagGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAG
    ||   |||     | ||  |||    ||||   ||  |  || ||   || |||  | |  |     || ||||     ||  |   || || ||||||||| ||||| ||||||||||| || ||||||||||| ||| |||| |||||||| ||||| || ||||||||| |    || |    ||||||    |
ggctgtgccccatatgtattaagtaatcgattttcagttgca-gatcacacccaatgtgcccatttgctaaaatttttgagactcaaaactttgttcacagGTTCGTTATGAAAGCAGAAAGAAGCTTGCAGAGCAGCGACCCCGAGTAAAAGGACAGTTTGTTCGACAAGTGCATACCATCCCCCCACCTGCAGAGCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999791|gb|BI320605.1|BI320605
EST:     CTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG                         GTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAA
genomic: CTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgtttgccact ... tttttaacagGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgactatcattgtttcaaaatatgctaacttttttcttatactttttaacagGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAG
                         tgctaac  putative branch site (score: 1)
                               cttttttcttatactt  CT-rich tract
                            taacttttttcttata  TA-rich tract