1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatcccatactttaaaaagcatgagggtgctggattagtctatggagttacccttaaaataaaaagtagtggacaaaatttttgactggtgtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG
species | Glycine max |
transcript | GLYMA06G14060.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208155050|gb|GD956201.1|GD956201
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGEST: gi|207736719|gb|GD710344.1|GD710344
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAG
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|5677805|gb|AI938935.1|AI938935
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193572196|gb|FK532419.1|FK532419
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGTCACAGEST: gi|14011762|gb|BG726684.1|BG726684
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAG
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208124774|gb|GD924220.1|GD924220
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: CGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|207718222|gb|GD698814.1|GD698814
genomic: CGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGEST: gi|193694513|gb|FK627263.1|FK627263
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATG
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193430706|gb|FK396424.1|FK396424
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: CCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|207825482|gb|GD800567.1|GD800567
genomic: CCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: ACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193532913|gb|FK488519.1|FK488519
genomic: ACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|207703994|gb|GD684962.1|GD684962
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGEST: gi|31468970|gb|CD410998.1|CD410998
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCG
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208250928|gb|GE050051.1|GE050051
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAEST: gi|31311171|gb|CD396374.1|CD396374
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCA
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTAATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193620835|gb|FK568503.1|FK568503
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208176930|gb|GD976001.1|GD976001
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: CTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193529782|gb|FK485687.1|FK485687
genomic: CTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|10253540|gb|BE821306.1|BE821306
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|23726789|gb|BU761397.1|BU761397
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208172876|gb|GD969395.1|GD969395
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208167455|gb|GD965121.1|GD965121
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193726924|gb|FK660250.1|FK660250
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|193551835|gb|FK506492.1|FK506492
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|207814380|gb|GD786903.1|GD786903
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|207749718|gb|GD718098.1|GD718098
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208245893|gb|GE044779.1|GE044779
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCEST: gi|208165626|gb|GD963670.1|GD963670
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAAGAAGTAAGTCGTTCTAGGAAGCCACAGCAGAEST: gi|15199933|gb|BI424083.1|BI424083
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGA-GA-GTA-GTCGTTCTAGGA-GCCACAGCAGA
EST: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
genomic: AACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGC
agttacccttaaaataaaaagtagtggacaaaatttttgactggtgtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG
ttttgac putative branch site (score: 3)
ttaaaataaaaagtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcccatactttaaaaagcatgagggtgctggattagtctatggagttacccttaaaataaaaagtagtggacaaaatttttgactggtgtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT