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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattaaaatataacatgattttgcatccatacttttttatttttgttttttatgggatgcatttacagtccttaattatgtatgttattcttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCTGCTATTGGGCTGGGCAAAATAAGCGAACAAAAAGGGATATTGGGCCCAG

Basic information

species Glycine max
transcript GLYMA06G13240.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022668|gb|BM093702.1|BM093702
EST:     CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
EST: gi|31309499|gb|CD394702.1|CD394702
EST:     CCCCGATTCATACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
EST: gi|31305797|gb|CD391000.1|CD391000
EST:     CCCCGATTCTTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
EST: gi|208108565|gb|GD904827.1|GD904827
EST:     CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttatgggatgcatttacagtccttaattatgtatgttattcttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCTGCTATTGGGCTGGGCAAAATAAGCGAACAAAAAGGGATATTGGGCCCAG
                         ccttaat  putative branch site (score: 4)
                                        ttattcttct  putative PPT
                           ttaattatgtatgtta  TA-rich tract