Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtataggttctttgatactctgtctatgagaatgattaagtcatctttgtcattagagtttttatggattgtcctgtatattcgatttctcaaattttgttagagtaactcttcaaggcatagccatagccattatcaatcaggtaggctcttgtttgctgtcatcctcacttcatttttgtgatgtattcagATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTG

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 6
gtacagtataggttctttgatactctgtctatgagaatgattaagtcatctttgtcattagagtttttatggattgtcctgtatattcgatttctcaaattttgttagagtaactcttcaaggcatagccatagccattatcaatcaggtaggctcttgtttgctgtcatcctcacttcatttttgtgatgtattcagATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTG
                                                                                                                          |   || ||       | | ||   ||| |    |  ||| |    | | | | |    |||| ||||  ||||||||||| ||||| |||||||| ||| ||||||| |||||||| || ||||||| ||||||||| ||||||||||||||||||||||  | ||| ||| |||
--------------------------------------------------------------------------------------------------------------------------gtgaagacaccttttctgttaactgggtggatcttcatttaccaaaagcttgattctcattttttgattcattcagATATTCACAAATTTCCTTTCAAGTGTAATGATCCATGCAACACGACCATTTGCTGTGAATGAACGGATTCAAACAAAGATTAAAGATTCTGAAGTTTCTG

upper sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 9
gtacagtataggttctttgatactctgtctatgagaatgattaagtcatctttgtcattagagtttttatggattgtcctgtatattcgatttctcaaattttgttagagtaactcttcaaggcatagccatagccattatcaatcaggtaggctcttgtttgctgtcatcctcacttcatttttgtgatgtattcagATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTG
||| |       ||  |   ||   |   |||   ||   || |||     | ||   ||   |  |  ||      | ||| ||| |  |     | |   |  |||||| |   |||            |      | | || |||||      |  |||      |  ||    | |||||| ||||  ||||||||||| ||||| |||||||| ||  ||||||| |||||||| || |||||||||||||| ||  ||||||||||||||||| |||| ||||| ||| |||
gtaaaccccccttttctccttatcttccttattcaaac--ttcagtttctctggttcataccatactcttgatcatccttgtgtataccttcatcaagaccattctagagtgaaatttcct-------ttctgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttt-tgattcattcagATATTCACAAATTTCCTTTCAAGCGTAATGATCCATGCAACACGACCATTTGTTGTGAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaggtaggctcttgtttgctgtcatcctcacttcatttttgtgatgtattcagATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTG
                          tcctcac  putative branch site (score: 2)
                                 ttcattttt  TA-rich tract