Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatattgaatactgcctaggaggtgttcttagtacacattcttttgctaggtgacttttttctgttaaaatttcccacttgtctttgcttctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG

Basic information

species Glycine max
transcript GLYMA06G08670.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023801|gb|BM094835.1|BM094835
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|38193158|gb|CF922364.1|CF922364
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTTTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|6725700|gb|AW310099.1|AW310099
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTCCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|6746798|gb|AW317254.1|AW317254
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|4396219|gb|AI495216.1|AI495216
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|254340295|gb|GR858420.1|GR858420
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|15662685|gb|BI700056.1|BI700056
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|7590445|gb|AW706197.1|AW706197
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|254323227|gb|GR840032.1|GR840032
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAG-ACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|8403661|gb|BE059295.1|BE059295
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|19270398|gb|BM886654.1|BM886654
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|37994228|gb|CF805974.1|CF805974
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|209714939|gb|BW650785.1|BW650785
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|13181381|gb|BG352782.1|BG352782
EST:     AGTTCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GGATTTGTTCAATGACTGGACTATTGAGTTGAAAGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|254340294|gb|GR858419.1|GR858419
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|214003944|gb|DB985213.1|DB985213
EST:     GTCCTCCCATTCATGG-GACATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: GTCCTCCCATTCATGGTG-CATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|6846499|gb|AW348789.1|AW348789
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|209696908|gb|BW660473.1|BW660473
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|254323228|gb|GR840033.1|GR840033
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|6848342|gb|AW350632.1|AW350632
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|120493721|gb|EH221888.1|EH221888
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTTTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGAT
EST: gi|298196784|gb|HO041527.1|HO041527
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|19346696|gb|BM891576.1|BM891576
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAA
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAA
EST: gi|18040205|gb|BM308499.1|BM308499
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|17963124|gb|BM269877.1|BM269877
EST:     CATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: CATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: gi|15813436|gb|BI785711.1|BI785711
EST:     AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG                         GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaggtgacttttttctgttaaaatttcccacttgtctttgcttctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG
                          tttcccacttgtcttt  CT-rich tract
           ttttttctgttaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatattgaatactgcctaggaggtgttcttagtacacattcttttgctaggtgacttttttctgttaaaatttcccacttgtctttgcttctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - ctgccta
- - - - - - - - - -ggaggtg
- - - - - - - - - - - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt