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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtataagatccatgcatacatgtgaaaggaaaaaatttctgtataatcatttggttgttacttctatttattttgactacatatttttttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCT

Basic information

species Glycine max
transcript GLYMA06G08620.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 3'ss of exon 9
atgtataagatccatgcatacatgtgaaaggaaaaaatttctgtataatcatttggttgttacttctatt-tattttgactacatatttttttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCT
  || |  |     ||  |  | || ||   |   | ||    |      |||   |||||  |||| |  |  ||    |  ||  |||| |  ||  ||| ||||||||||||||||| ||||||||||||||||||||||| |||  |  |||||| || |||||||||||| | ||||| ||    || |||||  |
gggtgttggggttgtgtttgta-gttaataaaggcacttcaattgatcgtattaatttgttttttctttgatgcttaccttgaattgttttctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcatttggttgttacttctatttattttgactacatatttttttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCT
                           ttttgac  putative branch site (score: 3)
                                    catatttttttccctc  putative PPT
                  ttctatttattttgac  TA-rich tract