1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtcttccatatctatcaatatgtattaggcatggcttgaatatggaacaactagtcttagtgttctaaatgtggaaacttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|9985118|gb|BE659226.1|BE659226
genomic: TCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|193529120|gb|FK484311.1|FK484311
genomic: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: ATCCATGCGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|13481114|gb|BG510457.1|BG510457
genomic: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|193571532|gb|FK532763.1|FK532763
genomic: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: GGAGTGTTGGATGTATTCTCATTGAACTATGCTCG GGGGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|22933892|gb|BU551031.1|BU551031
genomic: GGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: ATCCATGTGATTTGTGGAGTGNNNGATGTATTCTCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|207729049|gb|GD706385.1|GD706385
genomic: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: TGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGEST: gi|120529842|gb|EH257976.1|EH257976
genomic: TGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
EST: ATCCATGTGATTTGTGGAGTTTTGGAAGTATTCTCATCGAACTATGCTCG GGTGAAGCATTGTTTCAGACTCATGGAAACTTGGAGCACCTGGCAATGATG
genomic: ATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGgtttgtcttc ... cttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATG
ggcttgaatatggaacaactagtcttagtgttctaaatgtggaaacttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA
ttctaaa putative branch site (score: 2)
ctttt putative PPT
ttctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcttccatatctatcaatatgtattaggcatggcttgaatatggaacaactagtcttagtgttctaaatgtggaaacttttgacagGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA