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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttagaacattgactctttttatttcaagccttgaaagtttacatttccttaaacaaaatgtaattagtttcttcataccattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193373521|gb|FK340293.1|FK340293
EST:     GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
genomic: GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
EST: gi|207764192|gb|GD738007.1|GD738007
EST:     GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
genomic: GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
EST: gi|207789285|gb|GD760787.1|GD760787
EST:     ACTTTCTACCAGACATTGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGGACGGGCAGTATTCCTGAAAACATAGGCA
genomic: ACTTTCT-CCAGACA-TGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTT-GACGGGCAGTATTCCTGAAAACATAGGCA
EST: gi|193419263|gb|FK382759.1|FK382759
EST:     GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
genomic: GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtttacatttccttaaacaaaatgtaattagtttcttcataccattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTT
                                            ccatttt  CT-rich tract
               ttaaacaaaatgtaat  TA-rich tract