1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagttccttgtttaggaagtaaattttctgtgtactgatggtgacgaagagtctacctctccttgtcactttatggggataataaatttatttcttacttcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACAGTGCTGATTTTGGTAAAGACTAGAATCTATTGCAAAATTCTTGCAGAG
species | Glycine max |
transcript | GLYMA06G03230.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAEST: gi|193627838|gb|FK578020.1|FK578020
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAA
EST: ATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACGCTACEST: gi|208330578|gb|GE128029.1|GE128029
genomic: ATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTAGAACGAGGCAAAGAAEST: gi|151393977|gb|EV263848.1|EV263848
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACT-GAACGAGGCAAAGAA
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACEST: gi|24135574|gb|BU926084.1|BU926084
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACEST: gi|26058654|gb|CA801568.1|CA801568
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACEST: gi|254346176|gb|GR859789.1|GR859789
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACEST: gi|193478720|gb|FK444149.1|FK444149
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
EST: ATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACGCTACEST: gi|19346305|gb|BM891185.1|BM891185
genomic: ATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
EST: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG GCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
genomic: CAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGgtgagttcct ... tcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTAC
acctctccttgtcactttatggggataataaatttatttcttacttcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACAGTGCTGATTTTGGTAAAGACTAGAATCTATTGCAAAATTCTTGCAGAG
ttcttac putative branch site (score: 2)
tttatttcttacttc CT-rich tract
ataataaatttatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttccttgtttaggaagtaaattttctgtgtactgatggtgacgaagagtctacctctccttgtcactttatggggataataaatttatttcttacttcggttccagGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACAGTGCTGATTTTGGTAAAGACTAGAATCTATTGCAAAATTCTTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT