1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacttcttttttggatggaaccaaatttaatgccttcataccttttcctcaatgttctattcatcatttatcatatttaattttattacctttacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGATATATCCTCTCCAAAAGCGATGAAGAGTTATTCACACCTTACGCTGACCC
species | Glycine max |
transcript | GLYMA06G01260.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCCAGGATACCCAACG GTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGATEST: gi|193582078|gb|FK536947.1|FK536947
genomic: AGCCAGGATACCCAACGgtacttcttt ... tacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGAT
EST: TTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACG GTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGATEST: gi|12490007|gb|BG043528.1|BG043528
genomic: TTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACGgtacttcttt ... tacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGAT
EST: TTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACG GTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGATEST: gi|208304061|gb|GE103834.1|GE103834
genomic: TTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACGgtacttcttt ... tacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGAT
EST: TTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACG GTAAAAGGCAGTGACACATCAACTGCTGAATCAGGG
genomic: TTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACGgtacttcttt ... tacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGG
ctcaatgttctattcatcatttatcatatttaattttattacctttacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGATATATCCTCTCCAAAAGCGATGAAGAGTTATTCACACCTTACGCTGACCC
atttaat putative branch site (score: 4)
cctttacct putative PPT
tattcatcatttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttcttttttggatggaaccaaatttaatgccttcataccttttcctcaatgttctattcatcatttatcatatttaattttattacctttacctaacagGTAAAAGGCAGTGACACATCAACTGCTGAATCAGGGTCAGAAGCCGAAGATATATCCTCTCCAAAAGCGATGAAGAGTTATTCACACCTTACGCTGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA