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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttcctcttctgtgttccatgttcacaatcctaaggagattcgcacttggttagaaaaatgactacatacatatatatcttctttctaaatttggatgtgttataaccagGTCAAAATAATTATGGCTACAAATAGGCTTGATGTTCTTGACCCGGCTCTTCTTCGTCATGGTCGAATTGATCGGAAAATTGAAATTACATTACCAAATA

Basic information

species Glycine max
transcript GLYMA06G01200.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01200.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S13_419V6.1 (Physcomitrella patens), 3'ss of exon 7
gtgatttcctcttctgtgttccatgttcacaatcctaaggagattcgcacttggttagaaaaatgactacatacat---atatatcttctttctaaatttggatgtgttataacca--gGTCAAAATAATTATGGCTACAAATAGGCTTGATGTTCTTGACCCGGCTCTTCTTCGTCATGGTCGAATTGATCGGAAAATTGAAATTACATTACCAAATA
                   |  |  |  | ||   |  |   || | ||| | |  | || | |||  | | |  |     | |     ||  ||  |    |  | || | |  |  ||| || || || ||||| || ||  |||  |||||||||||||| |||||||| || | ||||||  | ||||| || ||||||||| || |||||||| 
------------------gtagacctggaaaaatttctgtcaatgc-cacgttgccataatagtgatcatagatttcgaggaaacaccgttgatagttgccaacatcttgtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTCTACGACCTGGTCGTTTGGATCGAAAGATTGAAATTCCACTACCAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgactacatacatatatatcttctttctaaatttggatgtgttataaccagGTCAAAATAATTATGGCTACAAATAGGCTTGATGTTCTTGACCCGGCTCTTCTTCGTCATGGTCGAATTGATCGGAAAATTGAAATTACATTACCAAATA
                            ttctaaa  putative branch site (score: 2)
           atacatatatatcttc  TA-rich tract