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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgattatcactcgtcttacatttagcttctttgcgtatttgatgatttaatttattttttaacgtgtagATATTGGAATTACTTGAGGAAACAAACATTTGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT

Basic information

species Glycine max
transcript GLYMA05G35860.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35860.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 10
---------gtttgtgattatcactcgtcttacatttagcttctttgcgtatttgatgatttaatttattttttaacgtgtagATATTGGAATTACTTGAGGAAACAAACATTTGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
          |||   ||| | ||      || |   | |   ||  |   |||    |  ||   | | | || |  || ||||| ||||||||| | ||||||||||| |||||| | || |||||| || |||| ||||||||| |||||||||||||| | ||| |  | |||||||||
gtactacaaatttcatattgtaaccttatgtataggcaacaaattatcccttttacatacatatgctctatcttta--tgcagATACTGGAATTACCTAAGGAAACAAACTTTTGTTCTTGAATCATATGTATCAAAGGTTAACTGGATGATGAACCGTGCACTATTTGCATCGCACTGCTAT

upper sequence: GLYMA05G35860.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G061419_T01 (Zea mays), 3'ss of exon 10
----------------------------gtttgtgattatcactcgtcttacatttagcttct-ttgcgtatttgatgatttaatttattttttaacgtgtagATATTGGAATTACTTGAGGAAACAAACATTTGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
                            |||| || | | |    || |     ||| ||  |  ||  |  || ||       ||| ||||| |   || ||||| ||||||||| | ||||||||||| |||||| | ||||||||| || | ||||| |||||| |||||||||||||||| ||||| | ||| ||||||
atactttgggtttcttttctgtgcacatgtttatgctaaaccaatgtatgcatcttaactaatactgttttcttcatatacatgtttgtttttca---tgcagATACTGGAATTACCTCAGGAAACAAACTTTTGTTCTCGAGTCATATGTATCGAATGTAAACTGGATGATGAACCGTGCATTATTTACAAGCCATTGCTAT

upper sequence: GLYMA05G35860.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtgattatcactcgtcttacatttagcttctttgcgta------tttgatgatttaatttattttttaac-gtgtagATATTGGAATTACTTGAGGAAACAAACATTTGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
|||| ||||  || ||  | | | | || | || ||  | |        ||| |||| |  |   ||||| |   ||||||||| ||||||||||||||||| |||||||||||| | || |||||  |  | || ||||||||||| ||||| |||||||| ||| || |||||||||||
gtttttgatattccct--tttcaaaatttgttttttcacatggtattccttgttgatcttttccctttttgacttgtgtagATACTGGAATTACTTGAGGAAGCAAACATTTGTTCTTGAATCATACATTTCGAAGGTTAACTGGGTTATGAATCGTGCATTATTTTCTTCCCACTGCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttacatttagcttctttgcgtatttgatgatttaatttattttttaacgtgtagATATTGGAATTACTTGAGGAAACAAACATTTGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
                                          ttttaac  putative branch site (score: 2)
                                    tttatttttt  CT-rich tract
                     tatttgatgatttaat  TA-rich tract