1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttaacccatgaaggtatttattttatacttcgctatttggtatatgcattttccttgttcagtaatagatccaataatcaataattgttctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCAGAAGTTGGGGAGTTGAGAGTGT
species | Glycine max |
transcript | GLYMA05G35260.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAG AACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGEST: gi|14011245|gb|BG726167.1|BG726167
genomic: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAGgttctttttt ... tctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
EST: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAG AACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGEST: gi|21887556|gb|BQ740769.1|BQ740769
genomic: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAGgttctttttt ... tctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
EST: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAG AACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGEST: gi|58015812|gb|CX702554.1|CX702554
genomic: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAGgttctttttt ... tctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
EST: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAG AACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGEST: gi|11689043|gb|BF596719.1|BF596719
genomic: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAGgttctttttt ... tctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
EST: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAG AACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGEST: gi|193375479|gb|FK342978.1|FK342978
genomic: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAGgttctttttt ... tctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
EST: GACATGATTTTTTAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAG AACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
genomic: GACATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGCCAAGGATCAGgttctttttt ... tctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTG
atgcattttccttgttcagtaatagatccaataatcaataattgttctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCAGAAGTTGGGGAGTTGAGAGTGT
ttgttctccc CT-rich tract
aataatcaataattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaacccatgaaggtatttattttatacttcgctatttggtatatgcattttccttgttcagtaatagatccaataatcaataattgttctcccgcagAACCCAAAATGGAAACCATCAAGCTTGGAGGAAGTTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCAGAAGTTGGGGAGTTGAGAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -ccatgaa