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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggatgaatttgctattaataatatgtattttgtgatattgggagatatttattatattccattgtctattgcataaacctttgattttagGGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTAGAGGGAATTTGTTAAGGCGATGCTCTTCAGGACCAAGTGATCTGATTCT

Basic information

species Glycine max
transcript GLYMA05G34820.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021999|gb|CX708740.1|CX708740
EST:     ACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATG                         GGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTA
genomic: ACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATGgtaaaggatg ... ttgattttagGGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTA
EST: gi|7284094|gb|AW596693.1|AW596693
EST:     ACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATG                         GGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTA
genomic: ACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATGgtaaaggatg ... ttgattttagGGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgggagatatttattatattccattgtctattgcataaacctttgattttagGGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTAGAGGGAATTTGTTAAGGCGATGCTCTTCAGGACCAAGTGATCTGATTCT
                                           ctttgat  putative branch site (score: 5)
                                          ccttt  CT-rich tract
       agatatttattatatt  TA-rich tract