1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatttgctgctaatatttcaaatcacatgtttatcgtttatctcgggattctactcctttcggtaagtgatagactgctaagttttacatctttcatctcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTCAACCTTTTTCAGGGAAGAAGTATTCTTTACGGGGTTAAATTAAAATGG
species | Glycine max |
transcript | GLYMA05G34630.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTEST: gi|22523548|gb|BU082350.1|BU082350
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTEST: gi|120529383|gb|EH257517.1|EH257517
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTEST: gi|10233467|gb|BE802355.1|BE802355
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTEST: gi|58014687|gb|CX701429.1|CX701429
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTEST: gi|254345890|gb|GR859537.1|GR859537
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTEST: gi|192309317|gb|FK000525.1|FK000525
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
EST: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAG GCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
genomic: GCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGgtaatttgct ... tcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTT
ctcctttcggtaagtgatagactgctaagttttacatctttcatctcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTCAACCTTTTTCAGGGAAGAAGTATTCTTTACGGGGTTAAATTAAAATGG
tctttcatctcatct CT-rich tract
taagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgctgctaatatttcaaatcacatgtttatcgtttatctcgggattctactcctttcggtaagtgatagactgctaagttttacatctttcatctcatctgcagGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTCAACCTTTTTCAGGGAAGAAGTATTCTTTACGGGGTTAAATTAAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT