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...ttactatgtggttattttggattagcgaatgcatagccatttaaaatcctgcttctgaactttgataataatgatgcacatcttatcttggttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGGAGGAGCGGTTAAATATGGGTCTGAATTTTATTCTTTCTGCAGAG
species | Glycine max |
transcript | GLYMA05G34360.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAG TGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGEST: gi|31311896|gb|CD397099.1|CD397099
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAG TGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGEST: gi|193412024|gb|FK379075.1|FK379075
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAG TGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGEST: gi|120532642|gb|EH260775.1|EH260775
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTACGACTACATCCTTAGACAG TGCCGCCTTAGGGGAAAGATTGACTCCAATGGCTGTGTTGCTGCTTTTTTGEST: gi|120533441|gb|EH261574.1|EH261574
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTACGACTACATCCTTAGACAG TGCCGCCTTAGGGGACAGATTGACTCCAATGGCTGTGTTGCTGCTTTTTTGEST: gi|209707360|gb|BW670910.1|BW670910
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAG TGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGEST: gi|192322688|gb|FK015025.1|FK015025
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
EST: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAG TGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
genomic: TGTCAAGAGATGTCACAGCTAGCTTTGGTTATGACTACATCCTTAGACAGgtagttttct ... gttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTG
atcctgcttctgaactttgataataatgatgcacatcttatcttggttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGGAGGAGCGGTTAAATATGGGTCTGAATTTTATTCTTTCTGCAGAG
ctttgat putative branch site (score: 5)
aactttgataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactatgtggttattttggattagcgaatgcatagccatttaaaatcctgcttctgaactttgataataatgatgcacatcttatcttggttactgtagTGCCGCCTTAGGGGAAAGATTGATTCCAATGGCTGTGTCGCTGCTTTTTTGGAGGAGCGGTTAAATATGGGTCTGAATTTTATTCTTTCTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG