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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaatactaccgattcataattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

Basic information

species Glycine max
transcript GLYMA05G31450.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 9
--------gtctaatactaccgattcataattgtt-caatgaattaattctctcatttccccctttaattaaatttctgaaatacaatt-attaaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
        |   || || |     |  || ||  |      |   |||   || |     |  || || |  ||    | | |    || || ||| | |||||||| || || |||||||||||||||||  || | |||||| | || |||||||| |||||||||||||| ||||||||| | || |||||||||||||
acttgcaggaacaaaacaaatttctgttagtttctgttgcaatgcaatgtgctgaaaaatcatttgaaattgatga--ggagtttggttgatgaaactgcagGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACA

upper sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 9
gtctaatactaccgattcataattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattat------taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
   |||  ||          | |  |||   |   |   |    |   ||   ||  |||  |    || |  | |  |||       | ||| |||||||||||| || ||||| |||||||| ||  |  |||||||| | || |||||||| |||||| |||||||||| |||||  | || || ||||||||||
--gtaagccttttcgcctgcattaattc--cggcatcgctgcaccgcatcttgctccaatccagccgctaatcttctcttacaaaacctgaatgacagGTTCCACCCGGCACACCGGTGGTGAACGCTCTTGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCTTGCGTTGGCCTGGCCCCAGAGAACAACA

upper sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 7
gtctaatactaccgattcataattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaatt------acagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
   |||  ||          | |  |||  ||   |   |    |   ||   || ||||  |    || |  | |  |||  |||        ||||||||  || || ||||  |||||||||||  || |||||||| | || |||||||| |||||| ||||||| ||||||||  | || |  ||||||||||
--gtaagccttttcgcctgcattaattc--tggcatcgctgcaccgcatcttgctctaatctagccgctaatcttctcttacaaaacctgaacgacagGTTCTGCCCGGCACACTGGTGGTGAATGCTCTGGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGTGTTGGCCTGGCCCTAGAGAACAACA

upper sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 9
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 9
gtctaatactaccgattcataa--ttgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
    |  |  |||||  || ||  |||| |  |   | ||| ||  |    |  |||||||    ||  ||   || ||||      | | |||||||| || || || ||||| || ||||| ||||| || ||||| || ||||| || ||| | || || |||||||||||| | ||||||||||||||||
-gtaagcaaaaccgaagcaaaacattgtgccgtttttcaatcctagcg--acttcctttaac---atcactttcattcaat-----gaatgcagGTTCCTCCTGGCACGCCAGTTGTTAATGCTTTGTCGAAACAGCGTGCAATGCTTGAGAACGTACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACA

upper sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
---gtctaa-tactaccgattcat---aattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaatta----cagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
    || || |  ||||   |  |    | | | | | ||||  |   | |  ||     | |||  | |  || | |  |    ||  |  ||||    ||||||||||| || || ||||||||||||||  || | |||||||| || ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagt-tagttgatagcatta--tgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269143|gb|CA820206.1|CA820206
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|12688993|gb|BG155329.1|BG155329
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|17020881|gb|BM091915.1|BM091915
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|193637582|gb|FK579495.1|FK579495
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|14999700|gb|BI320514.1|BI320514
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|22931708|gb|BU548847.1|BU548847
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|10231949|gb|BE800837.1|BE800837
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGG---                         GT-CCACCGGTTACACCATTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|13790509|gb|BG653100.1|BG653100
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|9204909|gb|BE331133.1|BE331133
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|151406372|gb|EV276187.1|EV276187
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|10253117|gb|BE820883.1|BE820883
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|208218887|gb|GE016177.1|GE016177
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|208284958|gb|GE086934.1|GE086934
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|15285788|gb|BI469679.1|BI469679
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|8669934|gb|BE191041.1|BE191041
EST:     CCACCCAGTTGCTACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|10847107|gb|BF069873.1|BF069873
EST:     CACCCAGTTGCGACCATCCTTAGTTACCTTGACCAAG-CCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCA
genomic: CACCCAGTTGCGACCATCCTTAGTTACCT-GACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCA
EST: gi|27425861|gb|CA937381.1|CA937381
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|193620855|gb|FK569965.1|FK569965
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|12688896|gb|BG155232.1|BG155232
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120492376|gb|EH220543.1|EH220543
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|6913141|gb|AW394671.1|AW394671
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|22525838|gb|BU084649.1|BU084649
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|208031199|gb|GD829797.1|GD829797
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCA
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCA
EST: gi|208178267|gb|GD978780.1|GD978780
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|22522672|gb|BU081483.1|BU081483
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|20498695|gb|BQ273625.1|BQ273625
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|7283317|gb|AW595925.1|AW595925
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|193479251|gb|FK446724.1|FK446724
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120495709|gb|EH223876.1|EH223876
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|13788713|gb|BG651304.1|BG651304
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120529467|gb|EH257601.1|EH257601
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|192305244|gb|FG997524.1|FG997524
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCCCCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|193360438|gb|FK328078.1|FK328078
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|208206425|gb|GE005436.1|GE005436
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|15664440|gb|BI701811.1|BI701811
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120493361|gb|EH221528.1|EH221528
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|208029216|gb|GD830992.1|GD830992
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAG
EST: gi|193479156|gb|FK448085.1|FK448085
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|17021005|gb|BM092039.1|BM092039
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|20448537|gb|BQ252661.1|BQ252661
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|192305229|gb|FG997523.1|FG997523
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGT
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGT
EST: gi|10234327|gb|BE803215.1|BE803215
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -TTC-ACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|15285651|gb|BI469542.1|BI469542
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|192300396|gb|FG987883.1|FG987883
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|14008873|gb|BG725477.1|BG725477
EST:     CACCCAGTTGCGACCATCCTTAGTTACCTGACNCAAG-CCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTT
genomic: CACCCAGTTGCGACCATCCTTAGTTACCTGAC-CAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTT
EST: gi|208304599|gb|GE106612.1|GE106612
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120496079|gb|EH224246.1|EH224246
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|17964415|gb|BM271150.1|BM271150
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|5677640|gb|AI938770.1|AI938770
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|15203180|gb|BI425948.1|BI425948
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|10231153|gb|BE800100.1|BE800100
EST:     CCACCCAGTTGCTACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|9902218|gb|BE611186.1|BE611186
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|12688968|gb|BG155304.1|BG155304
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|192301389|gb|FG994713.1|FG994713
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120495212|gb|EH223379.1|EH223379
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|208143541|gb|GD943329.1|GD943329
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|193647841|gb|FK595714.1|FK595714
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|17021564|gb|BM092598.1|BM092598
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGA
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGA
EST: gi|15200236|gb|BI424244.1|BI424244
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|7234796|gb|AW570129.1|AW570129
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|193594921|gb|FK546346.1|FK546346
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|22933777|gb|BU550916.1|BU550916
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|120492865|gb|EH221032.1|EH221032
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|6964194|gb|AW432887.1|AW432887
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAANCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|10234429|gb|BE803317.1|BE803317
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|7029141|gb|AW458924.1|AW458924
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCT-G---                         GTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|10231383|gb|BE800271.1|BE800271
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATG
EST: gi|9204546|gb|BE330770.1|BE330770
EST:     CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGT--                         -T-CCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAG
genomic: CCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAAgtctaatact ... taaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctctcatttccccctttaattaaatttctgaaatacaattattaaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
                 tttaattaaatttctg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctaatactaccgattcataattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaattacagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA