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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaattagtggtgaatggtgaactgatattaatttcttaaatgactcttgatgggaaattgcgtccttctttaatacaaaattgtaatcatttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAATCCCCAGCACTGATGATTCCCATTCAGTGCAAATTATTTTACCACAGA

Basic information

species Glycine max
transcript GLYMA05G30140.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30140.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0094g01550.t01 (Vitis vinifera), 3'ss of exon 9
-aaaaattagtggtgaatggtgaactgatattaatttcttaaatgactcttgatgggaaattgcgtccttctttaatacaaaattgtaatcatttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAATCCCCAGCACTGATGATTCCCATTCAGTGCAAATTATTTTACCACAGA
 || |   |    |   || |       |  |   || |||||  |||           |  | ||  | ||  |  | |   |  || | ||| || ||||||||||||||||| |||||||| || || ||   ||| ||||||||||||||||| | |||   |||||| || ||||| ||  ||||||| || || |
taagatgcaagcttctgtgtttcttccctcctttctttttaaa-aactaacataaaatcagagtgtgatgctaaagaagattttgttactaattgcaccagGTGAGGAAGGTTGGAAGGGTTGCTAGAGCAATCTGCATTATGAGCCACCCAATCCCAAACACCAGTGATTCTCACTCAGTTCAGGTTATTTTGCCGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207827157|gb|GD798294.1|GD798294
EST:     CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAACCATCATGAGCCACCCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: gi|207819023|gb|GD790399.1|GD790399
EST:     CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: gi|192313374|gb|FK005146.1|FK005146
EST:     CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAAGTTGG
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGG
EST: gi|193656048|gb|FK606678.1|FK606678
EST:     CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCA
EST: gi|6915949|gb|AW397479.1|AW397479
EST:     CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAGGTTGGTANGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: gi|208156728|gb|GD957262.1|GD957262
EST:     CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: gi|208226200|gb|GE025527.1|GE025527
EST:     CTGCAAAGTGT-AAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG                         GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgatgggaaattgcgtccttctttaatacaaaattgtaatcatttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAATCCCCAGCACTGATGATTCCCATTCAGTGCAAATTATTTTACCACAGA
                        ctttaat  putative branch site (score: 4)
                                           tcatttc  putative PPT
                      ttctttaatacaaaat  TA-rich tract