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...agaatgagattgatagagtgcataaatattttacctattttaatgtttaaaaaatctggccattgcattcttttctgtatttaaactgatatttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTA
species | Glycine max |
transcript | GLYMA05G30130.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAEST: gi|27446310|gb|CA953433.1|CA953433
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAEST: gi|254341448|gb|GR850661.1|GR850661
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
EST: GCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAEST: gi|298188621|gb|HO035314.1|HO035314
genomic: GCTAGTAGAGCTACATGAGgttcaaaatc ... atttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAEST: gi|6725650|gb|AW310049.1|AW310049
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
tttaaaaaatctggccattgcattcttttctgtatttaaactgatatttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTA
aactgat putative branch site (score: 3)
tatttcttc CT-rich tract
tatttaaactgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgagattgatagagtgcataaatattttacctattttaatgtttaaaaaatctggccattgcattcttttctgtatttaaactgatatttcttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-gaatgag
- - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattgc