Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctccttatgagtgttcatcatatatcattgatcaatggaattttcattttgaggacttaatgacaaggattatgattctttttggtttgaacccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAGTGAGGAGCTCAATTTCTCAATATATTATTTGTTTGCTTTTCCACTTACTTTGATGATGTG

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29820.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 3'ss of exon 8
ctccttatgagtgttcatcatatatca-ttgatcaatggaattttcattttgaggacttaatgacaaggattatgattctttttggtttgaacccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAGTGAGGAGCTCAATTTCTCAATATATTATTTGTTTGCTTTTCCACTTACTTTGATGATGTG
||  ||||     | ||     ||  | ||  |   || ||| |  || ||  ||| || ||  || || |  | | ||       ||   ||   | ||| |||| || ||  |||||||||||||||||||||||||                                                              
cttattatataattacaaggagtagaaatttctgtttgtaatgtgaatattctggatttcattgcatggctattcactcaacc-aattactacttattcagGTTTTGGTGAACAACAAAACTGCTAGTGCAAGTGAAATT-------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaggacttaatgacaaggattatgattctttttggtttgaacccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAGTGAGGAGCTCAATTTCTCAATATATTATTTGTTTGCTTTTCCACTTACTTTGATGATGTG
         acttaat  putative branch site (score: 4)
                                              cccttgc  putative PPT
                       attatgattcttttt  TA-rich tract