1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctccttatgagtgttcatcatatatcattgatcaatggaattttcattttgaggacttaatgacaaggattatgattctttttggtttgaacccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
species | Glycine max |
transcript | GLYMA05G29820.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGCTATTGTTACAGATACTTCACCATTGATTCAAGCTCCTGTTGTT ATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAEST: gi|17021070|gb|BM092104.1|BM092104
genomic: AGAAAGCTATTGTTACAGATACTTCACCATTGATTCAAGCTCCTATTGTTgtaaaaaaat ... acccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
EST: AGAAAGCTATTGTTACAGATACTTCACCATTGATTCAAGCTCCTATTGTT ATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAEST: gi|11412269|gb|BF424280.1|BF424280
genomic: AGAAAGCTATTGTTACAGATACTTCACCATTGATTCAAGCTCCTATTGTTgtaaaaaaat ... acccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
EST: AGAAAGCTATTGTTACAGATACTTCACCATTGATTCAAGCTCCTGTTGTT ATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
genomic: AGAAAGCTATTGTTACAGATACTTCACCATTGATTCAAGCTCCTATTGTTgtaaaaaaat ... acccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
attttgaggacttaatgacaaggattatgattctttttggtttgaacccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
acttaat putative branch site (score: 4)
cccttgc putative PPT
attatgattcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccttatgagtgttcatcatatatcattgatcaatggaattttcattttgaggacttaatgacaaggattatgattctttttggtttgaacccttgcagATTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATA
- - - -tgagtgt
- - - - - - - - - - - - - - - - caatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg