1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtataaagttatcaattgttgcttctatcactgtcatcgcgaaatttgcttgatcaatttggtttaatctctcaatcttttttagcctccatgtttaccaaatttccaaatgcttacccagGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGTTTCCTTCTGCATATGTGGAGAAACGACAAAGAATCCCCTCTAGCAATA
species | Glycine max |
transcript | GLYMA05G29700.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAG GTGAGCCAATCCGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGEST: gi|193560192|gb|FK518897.1|FK518897
genomic: AAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAGgtttgtataa ... gcttacccagGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGG
EST: CAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAG GTGAGCCAATCCGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGEST: gi|15284843|gb|BI468734.1|BI468734
genomic: CAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAGgtttgtataa ... gcttacccagGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGG
EST: CAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAG GTGAGCCAATCCGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGG
genomic: CAGAAAAGGAACTGAGCTTTTCTAAGGGTGATTTTGTTGTTGTGCGAAAGgtttgtataa ... gcttacccagGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGG
atctctcaatcttttttagcctccatgtttaccaaatttccaaatgcttacccagGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGTTTCCTTCTGCATATGTGGAGAAACGACAAAGAATCCCCTCTAGCAATA
tgcttac putative branch site (score: 2)
cttaccc CT-rich tract
aatctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtataaagttatcaattgttgcttctatcactgtcatcgcgaaatttgcttgatcaatttggtttaatctctcaatcttttttagcctccatgtttaccaaatttccaaatgcttacccagGTGAGCCAATCAGGATGGTCAGAAGGCGAATGCAATGGCAAAGCAGGATGGTTTCCTTCTGCATATGTGGAGAAACGACAAAGAATCCCCTCTAGCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA