Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttattctttgattaacatatattttgattcactttaactagttacttagtgaactaagttcttatttaaaaaggagagttttcacaattggttttcagAATTTCTCAGAACCTGAAAATCTTTCTGCATATGATGGTTTGGAGTTCCGCCTAAAAGGTGATGGGCGTAGATATAAAATTATTGTTCGCACAAGCAGTG

Basic information

species Glycine max
transcript GLYMA05G29330.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29330.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g01640.t01 (Vitis vinifera), 3'ss of exon 9
-------ttttattctttgattaacatatattttgattcactttaactagttacttagtgaactaagttcttatttaaaaaggagagttttcacaattggttttcagAATTTCTCAGAACCTGAAAATCTTTCTGCATATGATGGTTTGGAGTTCCGCCTAAAAGGTGATGGGCGTAGATATAAAATTATTGTTCGCACAAGCAGTG
       | || || || |   | | | | |   || | |||| ||  ||| | |    | | |   ||| ||| | |||   | | |       ||| | ||||||||||| |||| ||||||  || ||||||||||||||||||||||| | ||||| ||||| ||||| ||  | |||||| |||||||||| ||||| | ||
ttagttttcttgtttttaggggaccttttgtaacgagttacttgaatcagtgatt----gcatt---ttcctatgtgaaacataaattcacttgtattagatttcagAATTTTTCAGTACCTGAGGATGTTTCTGCATATGATGGTTTGGAGCTGCGCCTTAAAGGAGATGGCCGCCGGTATAAACTTATTGTTCGAACAAGTAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttagtgaactaagttcttatttaaaaaggagagttttcacaattggttttcagAATTTCTCAGAACCTGAAAATCTTTCTGCATATGATGGTTTGGAGTTCCGCCTAAAAGGTGATGGGCGTAGATATAAAATTATTGTTCGCACAAGCAGTG
                                                ttttc  CT-rich tract
        aactaagttcttattt  TA-rich tract