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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaatacattaattctatggtgttccatcaactgctattctagatctcttcatcactttgttcttatattatactgagcagGTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG

Basic information

species Glycine max
transcript GLYMA05G28040.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28040.2 (Glycine max), 3'ss of exon 9
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 3'ss of exon 8
------gtattaatacatt----aattctatggtgttccatcaactgctattctagatctcttcatcactttgttcttatattatactgagcagGTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG
      ||   | ||   |    || |  ||  ||||   |    ||||   |  ||    |  |   |||  || || |  | |  |||  ||| |||||||||| ||||||||||| || |||||||| |||||  | || || |||||||| |||||| |||| 
gttcttgtcccactatgctgtataacttaattctgtttggttttgtgcttcccacgaatgttgtagt-cttaatttttcttctttcatga--agGCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAA

upper sequence: GLYMA05G28040.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtattaatacattaattctatggtgttccatcaactgctattctagatctcttcatcactttgttcttatattatactgagcagGTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG
               ||||  | | || |||  |     || |     ||  |  | ||        | | |||| ||  ||   | || |  |  ||| ||||||| |||||| |||||||||| ||||||||||||||  |||||||||||||||| ||  ||||||||
gtgcttaaaccttaatattgct-ccttgattgcagtacttttctgtgcctcatgctatatgcagtgaccttacttggtcattcc-tgattcctattagGCTGGCTAGCTGTATGCTGGCCTCTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023928|gb|BM094962.1|BM094962
EST:     GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAG                         GTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTAT
genomic: GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatac ... tactgagcagGTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaactgctattctagatctcttcatcactttgttcttatattatactgagcagGTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG
                              tttgttcttatattat  TA-rich tract