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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagataagcagttttcaaatgccagggacgtgcttatactagagaattcttttattcaaattaacttaacaatgtagGTGAGGCAGTGCTTCATGGGAGCTCGAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTTTTTGTCAAATATAACAGAATGTTACATGGGAA

Basic information

species Glycine max
transcript GLYMA05G25980.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25980.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 9
gtagataagcagt----tttcaaatgccag------ggacgtgcttatactagagaattcttttattcaaattaacttaacaatgtagGTGAGGCAGTGCTTCATGGGAGCTCGAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTTTTTGTCAAATATAACAGAATGTTACATGGGAA
|||| | | | ||    | | |  ||  ||       |  ||   |||      | |     | |    |   |||||||   | |||||  || |   ||| ||||| | || |||||||||| ||| ||||||||||||| ||  |||||||| |||||||| || ||  | ||| ||||||||||
gtag-tgaccggtatcatcttagttggtagctttctagctgtttctatctatatggaactgctcaactgatgcaacttaat--tttagGTCTGGGAACACTTGATGGGGGTTCAAGATATGGAAAAGATGATGAAGCTGATACGGGTTCATCTGTCTTTGTCAAGTACAATCGCATGCTACATGGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789161|gb|BG651752.1|BG651752
EST:     ATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAG                         GTGAGGCAGTGCTTCATGGGAGCTCGAGATATGGAAGAGAAGAT
genomic: ATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAGgtagataagc ... aacaatgtagGTGAGGCAGTGCTTCATGGGAGCTCGAGATATGGAAGAGAAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagggacgtgcttatactagagaattcttttattcaaattaacttaacaatgtagGTGAGGCAGTGCTTCATGGGAGCTCGAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTTTTTGTCAAATATAACAGAATGTTACATGGGAA
                      aattcttttattcaaa  TA-rich tract