1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atccaatgttgtttttagctttcttctaactatttgaatattgtgcatgcaattatgcaccgagttgacacttgtttgggcctctgtgtacacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAG
species | Glycine max |
transcript | GLYMA05G24610.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAGGTGGGTGCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAG GTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATEST: gi|22929560|gb|BU546699.1|BU546699
genomic: TAAAGTGGGTGCAAGGACCTGCTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAAT
EST: TAAAGTGGGTGCAAGGACCTGNNCATGGCATGTACCAGTATTTCATAAAG GTGGTCNCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATEST: gi|7233507|gb|AW568852.1|AW568852
genomic: TAAAGTGGGTGCAAGGACCTGCTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAAT
EST: GCAAGGACCTGCTCATGGCATGTACCAGTATTTCATAAAG GTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAAT
genomic: GCAAGGACCTGCTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAAT
catgcaattatgcaccgagttgacacttgtttgggcctctgtgtacacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAG
agttgac putative branch site (score: 4)
aattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccaatgttgtttttagctttcttctaactatttgaatattgtgcatgcaattatgcaccgagttgacacttgtttgggcctctgtgtacacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAG
- ccaatgt
- - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctctg