1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttataataagctgcctatgcccttcctagcaccccagtatttggtaatatgaacttattttgcaaaatttttggtaaacaaaatatttattgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTGCACATTGAGTTGCTGGTGCTTGTTGTGATATGGTGTTCGTTCTTGTCA
species | Glycine max |
transcript | GLYMA05G22320.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|16279966|gb|BI943709.1|BI943709
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|17153984|gb|BM143917.1|BM143917
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|17518848|gb|BM187890.1|BM187890
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|20814462|gb|BQ298940.1|BQ298940
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTEST: gi|192303250|gb|FG995586.1|FG995586
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|31465610|gb|CD407638.1|CD407638
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|16343159|gb|BI968754.1|BI968754
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|22927857|gb|BU544996.1|BU544996
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|4299430|gb|AI442903.1|AI442903
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAAT-CAGAAAGTAGTAAAACTCGTEST: gi|7327072|gb|AW620870.1|AW620870
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTEST: gi|17401154|gb|BM177936.1|BM177936
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
EST: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCCACAGCAAAAGAAGCCATGgtaagatctc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGT
aatatgaacttattttgcaaaatttttggtaaacaaaatatttattgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTGCACATTGAGTTGCTGGTGCTTGTTGTGATATGGTGTTCGTTCTTGTCA
tattgat putative branch site (score: 3)
ttattttgcaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataataagctgcctatgcccttcctagcaccccagtatttggtaatatgaacttattttgcaaaatttttggtaaacaaaatatttattgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTGCACATTGAGTTGCTGGTGCTTGTTGTGATATGGTGTTCGTTCTTGTCA
- - - - - - -cctatgc
- - - - - - - - - - ccttcct
- - - - - - - - - - - - - - -cacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa