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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataaagagctcattaatttagcataacatggttattttgttgtgtattgcttaatttgcacaatattttatgatcttttgatttaacatttttttttatttgatgtattcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAACTTAAAACATTTTTGGATCCATAAACCTGAGTTCACATAT

Basic information

species Glycine max
transcript GLYMA05G22250.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22250.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 9
gtaataataaagagctcattaatttagcataacatggttattttgttgtgtattgcttaatttgc--acaatattttatgatcttttgatttaacatttt-tttttatttgatgtattcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAACTTAA--AACATTTTTGGATCCATAAACCTGAGTTCACATAT
                         |  | || ||  ||       ||   |  |||   ||||   | || |     || |   ||    | |||| || || | |  | ||||    | | |||||||||||||||||| |||||| ||||| || || |||||||| ||| | |||||||| | |    | | | | || || ||||||    ||  ||  |  
------------------------gaaaagaaaatttttggaaaactgcacaa-gctctgtttgatgataagaacaattgcttgattacactgacatgttattctcaacttatgttccgctgtagGCACATCCATATTTCTTTCAAGTGAGGGCTGCAGAGAGTAGCAGGATGCGAACACAGTAGCCTCTTCATCTTGTGTGCATACATAAAAAC-AGCGCATGTC-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424640|gb|CA936160.1|CA936160
EST:     AACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATG                         GCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
genomic: AACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATGgtaataataa ... attcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
EST: gi|207756458|gb|GD729023.1|GD729023
EST:     GGACAGGTTAACAGCAAGAGAAGCAATG                         GCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
genomic: GGACAGGTTAACAGCAAGAGAAGCAATGgtaataataa ... attcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
EST: gi|10233907|gb|BE802795.1|BE802795
EST:     AACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATG                         GCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
genomic: AACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATGgtaataataa ... attcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
EST: gi|20813781|gb|BQ298259.1|BQ298259
EST:     AACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATG                         GCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG
genomic: AACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATGgtaataataa ... attcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattttatgatcttttgatttaacatttttttttatttgatgtattcccgcagGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAACTTAAAACATTTTTGGATCCATAAACCTGAGTTCACATAT
                                            tattccc  CT-rich tract
     tttatgatcttttgat  TA-rich tract