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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcccaacaccattttaatttgattttctccataattagaaaatcatactagactacacttcttctttgtttttttttaaataatttattttgtttgcttccccttctttttcctttttttttttctttcatgattataatgattatcattgtttgcagGAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCTAAATATTCTGGGACAGAAAGCTATTTGATTAGCCATGCTCCTTTTTTGA

Basic information

species Glycine max
transcript GLYMA05G09220.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193534270|gb|FK491567.1|FK491567
EST:     CTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAG                         GAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT
genomic: CTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGgtgatcccaa ... ttgtttgcagGAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT
EST: gi|208163974|gb|GD959330.1|GD959330
EST:     CGTGGTTGGAATGTGCAG                         GAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT
genomic: CGTGGTTGGAATGTGCAGgtgatcccaa ... ttgtttgcagGAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttttcctttttttttttctttcatgattataatgattatcattgtttgcagGAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCTAAATATTCTGGGACAGAAAGCTATTTGATTAGCCATGCTCCTTTTTTGA
          tttttttttttctttc  TA-rich tract