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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgtaggttttgtctactcttccaacttctaaacaaattaaatattataatattttgatttcctattttcgtttcattttttttgggggtggggacagGCCATTCTTTCTGGGGAACCAAGTATTGTTGAGGCAGCTGCTGCATTGCTTAAGGCCATTGTTACCCGGAATCCCAAAGCTATGGTTCGTTTGTACAGCA

Basic information

species Glycine max
transcript GLYMA05G08040.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os10g42439.1 (Oryza sativa), 3'ss of exon 9
aattgtaggttttgtctactcttccaacttctaaacaaattaaatattataatattttgatttcc---tattttcgtttcattttttttgggggtggggacagGCCATTCTTTCTGGGGAACCAAGTATTGTTGAGGCAGCTGCTGCATTGCTTAAGGCCATTGTTACCCGGAATCCCAAAGCTATGGTTCGTTTGTACAGCA
| |  |   | || | |    |||   ||| |  | |  || | | || |  || ||  |||  |    | |  |     ||  |   |  |    || | |||| || ||| ||||||||||||| |||||||| ||||||||  |||| |||||||| ||||| ||  | || |||||||||||| ||||  | || || |
attctttcatattattt--ctttcttgcttttggatagttttatttttgtc-tacttctattatcgaacactgacaggaaatgataaatttgaaatggtatagGCTATGCTTACTGGGGAACCAAGCATTGTTGAAGCAGCTGCCTCATTACTTAAGGCTATTGTCACAAGAAACCCCAAAGCTATGATTCGACTATATAGTA

upper sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G001895_T01 (Zea mays), 3'ss of exon 3
aattgtaggttttgtctactcttccaacttctaaacaaattaaatattataatattttgatttcctattttcgtttcat-tttttttgggggtgg----ggacagGCCATTCTTTCTGGGGAACCAAGTATTGTTGAGGCAGCTGCTGCATTGCTTAAGGCCATTGTTACCCGGAATCCCAAAGCTATGGTTCGTTTGTACAGCA
  |||| | ||   |   ||  | |||||| | |   |  ||  | |     | ||||||     |   ||      ||  |          | |    | | |||| || ||| |||||||||| || || ||||| ||||||||  ||||||||||||| ||||||||  | ||||| ||||||||| |||| || || || |
--ttgt-gattcaatgatcttattcaacttttcat--atgtatttttctctttcttttgaacaatttcattgaccaaatgctgacaaaaaaattgcattgtatagGCTATGCTTACTGGGGAACCCAGCATCGTTGAAGCAGCTGCCTCATTGCTTAAGGCTATTGTTACAAGAAATCCTAAAGCTATGATTCGATTATATAGTA

upper sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G049288_T01 (Zea mays), 3'ss of exon 9
--aattgtaggttttgtctactcttccaacttctaaacaaattaaatattataatattttgatttcctattttcgtttcattttttttgggggtggggacagGCCATTCTTTCTGGGGAACCAAGTATTGTTGAGGCAGCTGCTGCATTGCTTAAGGCCATTGTTACCCGGAATCCCAAAGCTATGGTTCGTTTGTACAGCA
  | |      | || |  |   || ||  |  ||      |      ||  || | ||| |||  | |  | | |  ||           |    | | |||  || ||| ||||||||||||| |||||||| ||||||||  ||||||||| ||| ||||||||  | || || ||||||||| |||| || ||||  |
tgattcaattatcttattcaacttttcagatg-tatgtttctctttcttttgaacaatttaattgaccaaatgc-tgacaaaaaacaaattgtattgtatagGTTATGCTTACTGGGGAACCAAGCATTGTTGAAGCAGCTGCCTCATTGCTTATGGCTATTGTTACAAGAAACCCTAAAGCTATGATTCGATTATACATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attataatattttgatttcctattttcgtttcattttttttgggggtggggacagGCCATTCTTTCTGGGGAACCAAGTATTGTTGAGGCAGCTGCTGCATTGCTTAAGGCCATTGTTACCCGGAATCCCAAAGCTATGGTTCGTTTGTACAGCA
         ttttgat  putative branch site (score: 4)
     aatattttgatttcct  TA-rich tract