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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCCTTCTCCTACTTGATGAACGATCAAGCAGAACTGGCATTAAGGGATGCCA

Basic information

species Glycine max
transcript GLYMA05G06140.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G06140.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 3'ss of exon 9
gtagattctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCCTTCTCCTACTTGATGAACGATCAAGCAGAACTGGCATTAAGGGATGCCA
                                   ||||| ||   || |    || |    || |  |  || |  ||| | | |||||   ||    ||| |  ||   |      ||| || |||||    || ||| | || ||||||||| |||| ||||| |||||||| ||||||||||||||| |||| ||||||||||  |  ||||||||||| || || ||||||||||
-----------------------------------tggctcatgcatttctatgaatttgagattaagttcattttgtctca-gttatatagttaaa--gaaatttta--tttgttttttttttactttgtgagaaacagCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011822|gb|BG726744.1|BG726744
EST:     TTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAG                         TTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCC
genomic: TTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtagattctc ... cattaagcagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCCTTCTCCTACTTGATGAACGATCAAGCAGAACTGGCATTAAGGGATGCCA
                              ccctttatttctttgc  CT-rich tract
                                 tttatttcttt  TA-rich tract