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...ttcatacatcctagtgcagtgtgatttgtgaggtttatcagatattattaactgagaatggtcttgagttgtttgataacttctagaaaatccattgtagGTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAGCCTGTTGGTACAACATCTTACATTGGACGAGTGGAACAGCTTATGCAAT
species | Glycine max |
transcript | GLYMA05G04940.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAG GTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAGEST: gi|21995041|gb|BQ786569.1|BQ786569
genomic: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAGgttttttaaa ... tccattgtagGTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAG
EST: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAG GTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAGEST: gi|192321454|gb|FK011740.1|FK011740
genomic: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAGgttttttaaa ... tccattgtagGTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAG
EST: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAG GTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAGEST: gi|10236926|gb|BE805814.1|BE805814
genomic: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAGgttttttaaa ... tccattgtagGTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAG
EST: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAG GTGGCTAGGCA
genomic: ACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAGgttttttaaa ... tccattgtagGTGGCTAGGCA
tattaactgagaatggtcttgagttgtttgataacttctagaaaatccattgtagGTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAGCCTGTTGGTACAACATCTTACATTGGACGAGTGGAACAGCTTATGCAAT
tttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatacatcctagtgcagtgtgatttgtgaggtttatcagatattattaactgagaatggtcttgagttgtttgataacttctagaaaatccattgtagGTGGCTAGGCATCTCATCAAGACTATTTCTCAGTTGGGCTCCAGAAACAAGCCTGTTGGTACAACATCTTACATTGGACGAGTGGAACAGCTTATGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- catacat
- - - - - ctagtgc
- - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtttg