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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtagaatattgagaattagttttagacaacagtgtctaattttttattttttaaactcaccatcctaatgtagtaacttccctcaattcagGTTGCCTTGCTAGACTATGGACAGGTGAAGGATCTCCCAGATCAGTTGAGGCTTGCCTATGCTAATCTAGTTCTTGCAATTGCTAACGGTGACCCATTAA

Basic information

species Glycine max
transcript GLYMA05G02990.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02990.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 8
gtgggtagaatattgagaattagttttagacaacagtgtctaattttttattttttaaactcaccatcctaatgtagtaacttccctcaattcagGTTGCCTTGCTAGACTATGGACAGGTGAAGGATCTCCC-AGATCAGTTGAGGCTTGCCTATGCTAATCTAGTTCTTGCAATTGCTAACGGTGACCCATTAA-------------------
                      ||  |  ||     ||| | |  |   | ||   ||||| |   |    || |  |   ||||  ||| ||||||||| |||||||||||||| || |||||||| ||||| |||  |||||||| |||  ||||||||| |  |||| || |||||| |   ||||||| |||                   
----------------------gtcatttactctcatgtttgagatgcaactta--aaacttatttttgctattttctt-tttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttttattttttaaactcaccatcctaatgtagtaacttccctcaattcagGTTGCCTTGCTAGACTATGGACAGGTGAAGGATCTCCCAGATCAGTTGAGGCTTGCCTATGCTAATCTAGTTCTTGCAATTGCTAACGGTGACCCATTAA
                                  tagtaac  putative branch site (score: 1)
                                        cttccctc  CT-rich tract
     ttttattttttaaact  TA-rich tract