1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttcctaataggaaatctcagttcggggatcagtccatgtttctcatagaatattctcttacatatagaaatttcatgtggagtctaattatgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTCATTGGTCTTGAAGTTGAGCATATTGATGACCGCAATATGTGTTGTGGA
species | Glycine max |
transcript | GLYMA04G43340.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTEST: gi|41146199|gb|CK606410.1|CK606410
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTEST: gi|8827480|gb|BE211210.1|BE211210
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA GCCGATGNTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTEST: gi|51337140|gb|CO981006.1|CO981006
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTEST: gi|151412778|gb|EV282590.1|EV282590
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
atagaatattctcttacatatagaaatttcatgtggagtctaattatgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTCATTGGTCTTGAAGTTGAGCATATTGATGACCGCAATATGTGTTGTGGA
gtctaat putative branch site (score: 3)
ttacatatagaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctaataggaaatctcagttcggggatcagtccatgtttctcatagaatattctcttacatatagaaatttcatgtggagtctaattatgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTTCATTGGTCTTGAAGTTGAGCATATTGATGACCGCAATATGTGTTGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG